Mueller was born to actors Jill (née Shellabarger) and Roger Mueller and was raised in Evanston, Illinois.
Her brothers, Andrew and Matt, and sister, Abby, are all actors and known for their work in Chicago, off-Broadway, and Broadway productions. As of 2019, three of the four Mueller siblings had appeared in Broadway productions.
Mueller is Lutheran. She graduated from Evanston Township High School in 2001 and from Syracuse University in 2005.

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